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#ifndef FINDPRIMERS_H_
#define FINDPRIMERS_H_
#include <string>
#include "PrimersResults.h"
struct Arguments
{
long int MinWin, MaxWin, MinTm, MaxTm, MaxDiffTm, MinGC, MaxGC, MinAmp, MaxAmp;
double MinDeltaGH;
std::string FileName, FileTheo;
void Usage() const;
bool Init(int argc, const char* argv[]);
Arguments(int argc, const char* argv[]);
};
PrimersResults pResults;
void SearchPrimers(PrimersResults& results, TSetSeq& SetSeq, TSetSeq& TheoSeq, long int MinWin, long int MaxWin, long int MinTm, long int MaxTm, long int MinGC, long int MaxGC, double MinDeltaGH, long int Type);
void FindPrimers(int nb, const char *words[]);
#endif /*FINDPRIMERS_H_*/ |
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