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sub get_domain_proteic_id {
my ( $db, $trn, $log ) = @_;
print $log "<domain_protein_id>\n";
my $translation = $trn->translation;
if ($translation){
my $prot_feats = $translation->get_all_ProteinFeatures;
if ( scalar(@$prot_feats) > 0 ) {
for my $prot_feat (@$prot_feats) {
if ( $prot_feat->analysis->logic_name ) {
my $prog = $prot_feat->analysis->logic_name;
print $log "<domain_protein_name>\n";
print $log $prog, "\n";
print $log "</domain_protein_name>\n";
}
if ( $prot_feat->interpro_ac ) {
print $log "<domain_identifier>\n";
print $log "<domain_interpro_ac>\n";
print $log $prot_feat->interpro_ac;
print $log "</domain_interpro_ac>\n";
print $log "<domain_identifier>\n";
}
if ( $prot_feat->hseqname ) {
print $log "<domain_identifier>\n";
print $log $prot_feat->hseqname;
print $log "<domain_identifier>\n";
}
if ( $prot_feat->idesc ) {
print $log "<domain_short_name>\n";
print $log $prot_feat->idesc;
print $log "</domain_short_name>\n";
}
if ( $prot_feat->start ) {
print $log "<domain_start>\n";
print $log $prot_feat->start;
print $log "</domain_start>\n";
}
if ( $prot_feat->end ) {
print $log "<domain_end>\n";
print $log $prot_feat->end;
print $log "</domain_end>\n";
}
if ( $prot_feat->score ) {
print $log "<domain_score>\n";
print $log $prot_feat->score;
print $log "</domain_score>\n";
}
}
}
}
print $log "</domain_protein_id>\n";
} |
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