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-------------------- WARNING ---------------------
MSG: exception while parsing location line [join(AADL01000001.1:1..133665,gap(60),AADL01000002.1:1..784,gap(50),AADL01000003.1:1..1310,gap(50),AADL01000004.1:1..1019)] in reading EMBL/GenBank/SwissProt, ignoring feature CONTIG (seqid=unknown id):
------------- EXCEPTION -------------
MSG: operator "gap" unrecognized by parser
STACK Bio::Factory::FTLocationFactory::from_string /PERL/BioPerl_Modules//Bio/Factory/FTLocationFactory.pm:153
STACK Bio::Factory::FTLocationFactory::from_string /PERL/BioPerl_Modules//Bio/Factory/FTLocationFactory.pm:150
STACK (eval)
/PERL/BioPerl_Modules//Bio/SeqIO/FTHelper.pm:124
STACK Bio::SeqIO::FTHelper::_generic_seqfeature /PERL/BioPerl_Modules//Bio/SeqIO/FTHelper.pm:123
STACK Bio::SeqIO::embl::next_seq /PERL/BioPerl_Modules//Bio/SeqIO/embl.pm:342
STACK toplevel monfichier.pl:172
--------------------------------------
---------------------------------------------------
------------- EXCEPTION -------------
MSG: Got a sequence with no letters in - cannot guess alphabet []
STACK Bio::PrimarySeq::_guess_alphabet /PERL/BioPerl_Modules//Bio/PrimarySeq.pm:839
STACK Bio::PrimarySeq::seq
/PERL/BioPerl_Modules//Bio/PrimarySeq.pm:280
STACK Bio::PrimarySeq::new
/PERL/BioPerl_Modules//Bio/PrimarySeq.pm:217
STACK Bio::Seq::new
/PERL/BioPerl_Modules//Bio/Seq.pm:498
STACK Bio::Seq::RichSeq::new /PERL/BioPerl_Modules//Bio/Seq/RichSeq.pm:115
STACK Bio::Seq::SeqFactory::create /BioPerl_Modules//Bio/Seq/SeqFactory.pm:126
STACK Bio::SeqIO::embl::next_seq /PERL/BioPerl_Modules//Bio/SeqIO/embl.pm:364
STACK toplevel monfichier.pl:172 |
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