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 |  
package exo1;
import java.io.*;
 
import org.jdom.*;
import org.jdom.input.*;
 
 
import java.util.List;
import java.util.Iterator;
 
 
public class JDomErpine
{
	static org.jdom.Document document;
	static Element racine;
	static void afficheALL()
	{
		PrintWriter file = null;
		try {
			file = new PrintWriter(new BufferedWriter(new FileWriter("erpin.html")));
		} catch (IOException e) {
			System.out.println("Error: Opening failed!!!\n");
			// TODO Auto-generated catch block
			e.printStackTrace();
		}
 
		List<?> listReference = racine.getChildren("reference");
		List<?> listAuthor = racine.getChild("reference").getChildren("author");
 
		List<?> listMolecule = racine.getChild("molecule-class").getChildren("molecule");
		List<?> listAlignement = racine.getChild("molecule-class").getChildren("alignment");
		List<?> listConsensus = racine.getChild("molecule-class").getChildren("consensus-molecule");
		List<?> listHelix = racine.getChild("molecule-class").getChild("consensus-molecule").getChild("molecule").getChildren("structure");
 
 
		Iterator<?> i = listReference.iterator();
		Iterator<?> a = listAuthor.iterator();
 
		Iterator<?> m = listMolecule.iterator();
		Iterator<?> al = listAlignement.iterator();
		Iterator<?> co = listConsensus.iterator();
		Iterator<?> test = listHelix.iterator();
 
 
 
		while(i.hasNext())
 
		{
			Element courant = (Element)i.next();
			Reference ref = new Reference();
 
			ref.title=courant.getChildText("title").toString().replace("\n    "," ").trim();
			ref.journal=courant.getChildText("journal");
			ref.volume=courant.getChildText("volume");
			ref.pages=courant.getChildText("pages");
			ref.date=courant.getChild("date").getChildText("year");
			file.write(ref.toString());
 
		}
 
 
		while(a.hasNext())
		{	
 
			Element courant = (Element)a.next();
			Personne pers = new Personne();
 
			pers.name1=courant.getChild("person").getChildText("first-name");
			pers.name2=courant.getChild("person").getChildText("last-name");
			file.write(pers.toString());
		}
 
 
		/*
		while(test.hasNext())
		{
			Element courant = (Element)test.next();
 
 
			//mol.test=courant.getChild("str-annotation").getChild("helix");
 
		}
*/	
 
 
 
 
 
		while(m.hasNext())
		{
			Molecule mol = new Molecule();
			Element courant = (Element)m.next();
 
 
			mol.id= courant.getAttributeValue("id");
 
			mol.name=courant.getChild("identity").getChildText("name");
			mol.seq=courant.getChild("sequence").getChildText("seq-data").replace("\n", "").trim();
			mol.length=courant.getChild("sequence").getChildText("seq-data").replace("\n", "").trim().length();
			file.write(mol.toString());
 
		}
 
 
 
 
 
		while(al.hasNext())
		{
			Alignement algn = new Alignement();
			Element courant = (Element)al.next();
			algn.seqali=courant.getChild("ali-sequence").getChildText("seq-data");
			file.write(algn.toString());
		}
 
 
 
		while(co.hasNext())
		{
			Consensus cons=new Consensus();
			Element courant = (Element)co.next();
			cons.consensus=courant.getChild("molecule").getChild("sequence").getChildText("seq-data").replace("\n", "").trim();
			file.write(cons.toString());
		}
 
 
 
		file.close();
	}
 
 
	public static void main(String[] args)
	{
		SAXBuilder sxb = new SAXBuilder();
		try
		{
			document = sxb.build(new File("erpin.xml"));
		}
		catch(Exception e){
			System.out.println("Error: Opening failed!!!\n");
		}     
		racine = document.getRootElement();
		afficheALL();
	}
}
 
class Reference {
 
	public String title;
	public String journal;
	public String volume;
	public String pages;
	public String date;
 
	public String toString() {
		return "<h1>"+title+"</h1><h2>Journal:"+journal+"</h2><h3>Volume:"+volume+"</h3><h4>Pages:"+pages+"</h4><h5>Date de parution:"+date+"</h5>";
				//"</hr><center><table><br><u><b>Composition de chaque molecule:</b></u></br><tr><th>ID</th><th>Nom</th><th>Sequence</th></tr><tr><td>"+id+"</td><td>"+name+"</td><td>"+seq+"</td></tr></table></center><p><tr><td>Taille </td><td>"+length+"</td></tr></table></center><p><strong>Sequence alignee:</strong><ul><li>"+seqali+"</li></ul></p>";
	}
}
 
 
 
class Personne{
 
	public String name1;
	public String name2;
 
	public String toString() {
		return "<h6>"+name1+" "+name2+"</h6>";
				//"</hr><center><table><br><u><b>Composition de chaque molecule:</b></u></br><tr><th>ID</th><th>Nom</th><th>Sequence</th></tr><tr><td>"+id+"</td><td>"+name+"</td><td>"+seq+"</td></tr></table></center><p><tr><td>Taille </td><td>"+length+"</td></tr></table></center><p><strong>Sequence alignee:</strong><ul><li>"+seqali+"</li></ul></p>";
	}
}
 
class Molecule {
	public String id;
	public String name;
	public String seq;
	public int length;
 
	public String toString() {
		return "<head><title>XML</title></hr><center><table><br><u><b>Composition de la molecule:</b></u></br><tr><th>ID</th><th>Nom</th><th>Sequence</th></tr><tr><td>"+id+"</td><td>"+name+"</td><td>"+seq+"</td></tr></table></center><p><tr><td>Taille </td><td>"+length+"</td></tr></table></center>";
	}
}
 
class Alignement{
	public String seqali;
 
	public String toString() {
		return "<p><strong>Sequence alignee:</strong><ul><li>"+seqali+"</li></ul></p>";
	}
}
 
 
class Consensus{
	public String consensus;
 
	public String toString() {
		return "<p><strong>Sequence consensus:</strong><ul><li>"+consensus+"</li></ul></p></body></html>";
	}
} | 
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