I figured this baby my own self. See, when you are using the products shown below, it means your emulator has SQL Server Mobile Edition that comes with Microsoft Visual Studio 2005.
Microsoft Visual Studio 2005 v8.0.50727.42 (RTM.050727-4200)
Windows Mobile 2003 Second Edition v4.21.1088 (Build 14342.2.5.0)
SQL Server 2005 Mobile Edition v03.00.5206.00
Now, SQL Server Mobile Edition as the version states is basically SQL Server CE v03.00.~ which means that RDA communication would not recognize headers sent via the HTTP protocol using the sscesa20.dll. To synchronize using RDA between Microsoft SQL Server 2000 v8.0 (SP3a) and SQL Server 2005 Mobile Edition v03.00.~, you need to install:
Server Tools for SQL Server 2005 Mobile Edition for SQL Server 2000 (SP3a)
With that done, you'd need to create a virtual directory using the Configure Web Synchronization Wizard that comes with the Server Tools and then reference the sqlcesa30.dll file that is in the directory. That solved my problem!
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