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[shadow19c]

Bonjour,
j'ai un souci , voici un fichier d'entree:

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C169v2-04488	Aster-02037	
C169v2-04486	Aster-01953	
C169v2-04487	Aster-01955	
C169v2-04480	Aster-01952	
C169v2-04481	Aster-02044	
C169v2-03069	Aster-05875	
C169v2-03068	Aster-01970	
C169v2-03061	Aster-09631	
C169v2-03060	Aster-05848	
C169v2-03067	Aster-05871	
C169v2-03066	Aster-05821	
C169v2-03065	Aster-05822	
C169v2-03064	Aster-02229	
C169v2-03285	Aster-04817	
C169v2-03283	Aster-09580	
C169v2-03282	Aster-04854	
C169v2-03281	Aster-08098	
C169v2-03280	Aster-00683	
C169v2-03289	Aster-04366	
C169v2-03288	Aster-04853	
C169v2-07315	Aster-08200	
C169v2-07314	Aster-02529	
C169v2-07615	Aster-01715	
C169v2-02221	Aster-07576	
C169v2-02882	Aster-09328	
C169v2-02883	Aster-09329	
C169v2-02880	Aster-09326	
C169v2-02881	Aster-09327	
C169v2-02886	Aster-05256	
C169v2-01756	Aster-01973	
C169v2-01755	Aster-09492	
C169v2-01753	Aster-04906	
C169v2-01752	Aster-08130	
C169v2-07312	Aster-09080	
C169v2-01759	Aster-08117	
C169v2-01758	Aster-09060	
C169v2-09503	Aster-04029	
C169v2-03931	Aster-00704	
C169v2-03930	Aster-06862	
C169v2-03933	Aster-04202	
C169v2-09505	Aster-00556	
C169v2-03938	Aster-04180	
C169v2-02082	Aster-01121	
C169v2-02083	Aster-03253	
C169v2-02080	Aster-01115	
C169v2-02081	Aster-01032	
C169v2-02086	Aster-03186	
C169v2-02087	Aster-00563	
C169v2-02085	Aster-02895	
C169v2-02088	Aster-02889	
C169v2-02089	Aster-00369	
C169v2-01573	Aster-05168	
C169v2-01571	Aster-02523	
C169v2-01570	Aster-02904	
C169v2-06257	Aster-09605	
C169v2-01576	Aster-02511	
C169v2-01575	Aster-02265	
C169v2-01574	Aster-01376	
C169v2-01412	Aster-00987	
C169v2-01416	Aster-01281	
C169v2-01417	Aster-06735	
C169v2-06378	Aster-02992	
C169v1-03826	Aster-02347	
C169v1-03827	Aster-02365	
C169v2-05656	Aster-07458	
C169v2-05125	Aster-06767	
C169v1-06473	Aster-06093	
C169v2-00485	Aster-05380	
C169v2-00489	Aster-06856	
C169v2-05123	Aster-04652	
C169v2-01289	Aster-08842	
C169v2-01288	Aster-08846	
C169v2-01286	Aster-08847	
C169v2-01281	Aster-04936	
C169v2-01280	Aster-08613	
C169v2-01283	Aster-06061	
C169v2-00628	Aster-01420	
C169v2-00629	Aster-01423	
C169v2-00158	Aster-02088	
C169v2-00159	Aster-04703	
C169v2-00156	Aster-03172	
C169v2-00157	Aster-03173	
C169v2-00154	Aster-03767	
C169v2-00627	Aster-00756	
C169v2-00150	Aster-03128	
C169v2-08369	Aster-02026	
C169v2-08363	Aster-02541	
C169v2-08362	Aster-07030	
C169v2-08365	Aster-03910	
C169v2-08364	Aster-05668	
C169v2-08366	Aster-09560	
C169v2-05054	Aster-06213	
C169v2-05055	Aster-06214	
C169v2-05056	Aster-06212	
C169v2-05057	Aster-06211	
C169v2-05500	Aster-07358	
C169v2-05053	Aster-09546	
C169v2-05058	Aster-08524	
C169v2-05508	Aster-07335	
C169v1-00599	Aster-03067	
C169v2-04677	Aster-07022	
C169v2-04676	Aster-08741	
C169v2-04675	Aster-08752	
C169v2-04902	Aster-08211	
C169v2-04905	Aster-08907	
C169v2-04672	Aster-08743	
C169v2-04671	Aster-06891	
C169v2-09289	Aster-01570	
C169v2-04679	Aster-07009	
C169v2-04678	Aster-07023	
C169v2-07513	Aster-06950	
C169v2-04013	Aster-04250	
C169v2-04011	Aster-08505	
C169v2-04010	Aster-04261	
C169v2-04017	Aster-04288	
C169v2-04016	Aster-04290	
C169v2-04014	Aster-04289	
C169v2-04018	Aster-07649	
C169v2-07288	Aster-07921	
C169v2-07283	Aster-00641	
C169v2-07282	Aster-04026	
C169v2-07280	Aster-07923	
C169v2-07284	Aster-00642	
C169v2-07510	Aster-00685	
C169v2-06653	Aster-07377	
C169v2-06888	Aster-02084	
C169v2-06889	Aster-03279	
C169v2-06886	Aster-03282	
C169v2-06732	Aster-03327	
C169v2-06885	Aster-03281	
C169v2-06736	Aster-07131	
C169v2-03549	Aster-09185	
C169v2-03544	Aster-02499	
C169v2-03545	Aster-02352	
C169v2-03546	Aster-07303	
C169v2-03547	Aster-02290	
C169v2-03542	Aster-07215	
C169v2-03543	Aster-07542	
C169v2-02418	Aster-06163	
C169v2-06651	Aster-08474	
C169v2-07428	Aster-08207	
C169v2-02411	Aster-00852	
C169v2-02410	Aster-06629	
C169v2-07425	Aster-08210	
C169v2-02412	Aster-00710	
C169v2-02415	Aster-07304	
C169v2-02417	Aster-01245	
C169v2-07420	Aster-04770	
C169v2-06080	Aster-00115	
C169v2-06081	Aster-00114	
C169v2-07712	Aster-01883	
C169v2-06088	Aster-00184	
C169v2-06089	Aster-00185	
C169v1-03349	Aster-04850	
C169v2-06271	Aster-03554	
C169v1-03346	Aster-04815	
C169v1-06867	Aster-02751	
C169v2-06273	Aster-00299	
C169v1-07111	Aster-08122	
C169v2-07717	Aster-08397	
C169v2-01148	Aster-04996	
C169v2-01149	Aster-09242	
C169v2-01142	Aster-09243	
C169v2-01140	Aster-09244	
C169v2-01147	Aster-04997	
C169v2-01144	Aster-05365	
C169v2-01145	Aster-03632	
C169v2-07716	Aster-08068	
C169v2-00361	Aster-03081	
C169v2-00360	Aster-03085	
C169v2-00363	Aster-03078	
C169v2-00362	Aster-03075	
C169v2-00365	Aster-01092	
C169v2-00367	Aster-01094	
C169v2-00366	Aster-01093	
C169v2-07458	Aster-04764	
C169v2-07459	Aster-04765	
C169v2-09366	Aster-03745	
C169v2-09367	Aster-03744	
C169v2-04244	Aster-06713	
C169v2-04245	Aster-06694	
C169v2-04242	Aster-04496	
C169v2-04241	Aster-06678	
C169v2-09369	Aster-03748	
C169v2-07457	Aster-04868	
C169v2-07611	Aster-00523	
C169v2-07613	Aster-06734	
C169v1-03170	Aster-05846	
C169v2-07455	Aster-00525	
C169v2-02884	Aster-05165	
C169v2-05268	Aster-03960	
C169v2-05266	Aster-09522	
C169v2-05265	Aster-06055	
C169v2-05264	Aster-06056	
C169v2-05262	Aster-09524	
C169v2-05261	Aster-04022	
C169v2-08428	Aster-00569	
C169v2-08424	Aster-00078	
C169v2-07439	Aster-06708	
C169v2-03041	Aster-00834	
C169v2-03040	Aster-05834	
C169v2-03043	Aster-09157	
C169v2-03734	Aster-09359	
C169v2-03045	Aster-05843	
C169v2-03732	Aster-00816	
C169v2-03730	Aster-02334	
C169v2-03049	Aster-05851	
C169v2-03738	Aster-02849	
C169v2-02406	Aster-04060	
C169v2-04296	Aster-06670	
C169v2-07435	Aster-06709	
C169v2-07436	Aster-07477	
C169v2-05836	Aster-03784	
C169v2-02400	Aster-01976	
C169v2-02401	Aster-08794	
C169v2-05832	Aster-03724	
C169v2-05341	Aster-04015	
C169v2-05342	Aster-03188	
C169v2-09506	Aster-00435	
C169v1-04203	Aster-06649	
C169v2-05343	Aster-03961	
C169v2-09504	Aster-07370	
C169v2-07633	Aster-02509	
C169v2-07630	Aster-01837	
C169v2-07631	Aster-01874	
C169v2-07634	Aster-01875	
C169v2-07639	Aster-05763	
C169v2-03953	Aster-04218	
C169v2-03951	Aster-01410	
C169v2-03955	Aster-04199	
C169v2-03954	Aster-04239	
C169v2-03959	Aster-04228	
C169v2-06011	Aster-00116	
C169v1-03801	Aster-02505	
C169v2-01775	Aster-01257	
C169v2-01777	Aster-03220	
C169v2-01776	Aster-06066	
C169v2-01770	Aster-01259	
C169v2-01773	Aster-05489	
C169v2-02608	Aster-00719	
C169v2-02609	Aster-00720	
C169v2-02604	Aster-01533	
C169v2-02605	Aster-00871	
C169v2-02606	Aster-00732	
C169v2-02601	Aster-09123	
C169v2-02603	Aster-07762	
C169v2-06279	Aster-03546	
C169v2-06278	Aster-03590	
C169v2-01809	Aster-08035	
C169v2-01808	Aster-04783	
C169v2-01807	Aster-04457	
C169v2-01550	Aster-06010	
C169v2-01553	Aster-06012	
C169v2-01804	Aster-08469	
C169v2-06275	Aster-03550	
C169v2-06274	Aster-03547	
C169v2-06276	Aster-00681	
C169v2-06253	Aster-06913	
C169v2-00608	Aster-00379	
C169v2-06252	Aster-00272	
C169v2-00602	Aster-06268	
C169v2-00603	Aster-09121	
C169v2-00600	Aster-04364	
C169v2-00601	Aster-06299	
C169v2-00607	Aster-04348	
C169v2-00604	Aster-06241	
C169v2-00605	Aster-06242	
C169v2-08387	Aster-01773	
C169v2-06250	Aster-03132	
C169v2-08383	Aster-07763	
C169v2-08382	Aster-03796	
C169v2-08389	Aster-05241	
C169v2-05073	Aster-00672	
C169v2-05070	Aster-05912	
C169v2-06012	Aster-00117	
C169v2-05077	Aster-05947	
C169v2-05074	Aster-06720	
C169v2-05078	Aster-05946	
C169v2-06254	Aster-00268	
C169v2-09275	Aster-07413	
C169v2-07432	Aster-08195	
C169v2-09276	Aster-00425	
C169v2-06258	Aster-00301	
C169v2-05389	Aster-03830	
C169v2-05380	Aster-05487	
C169v2-05383	Aster-03776	
C169v2-05385	Aster-03932	
C169v2-05386	Aster-01748	
C169v2-05387	Aster-04658	
C169v2-04659	Aster-06489	
C169v2-04658	Aster-03984	
C169v2-04655	Aster-05450	
C169v2-04657	Aster-02205	
C169v2-04656	Aster-02203	
C169v2-04650	Aster-01958	
C169v2-04653	Aster-02029	
C169v2-04652	Aster-00607	
C169v2-04382	Aster-00264	
C169v2-04381	Aster-04444	
C169v2-04380	Aster-00310	
C169v2-04387	Aster-03314	
C169v2-04384	Aster-04965	
C169v2-04389	Aster-08057	
C169v2-04388	Aster-08040	
C169v2-05929	Aster-05740	
C169v2-05924	Aster-04164	
C169v2-05925	Aster-04161	
C169v2-05926	Aster-04163	
C169v2-04039	Aster-04270	
C169v2-04031	Aster-04241	
C169v2-04030	Aster-04240	
C169v2-04033	Aster-09287	
C169v2-04032	Aster-01767	
C169v2-04035	Aster-04272	
C169v2-03389	Aster-02492	
C169v2-03386	Aster-08961	
C169v2-03384	Aster-08004	
C169v2-03382	Aster-05175	
C169v2-02389	Aster-01762	
C169v2-02388	Aster-08991	
C169v2-02381	Aster-05640	
C169v2-02382	Aster-04101	
C169v2-02385	Aster-04269	
C169v2-02384	Aster-04092	
C169v2-02387	Aster-01620	
C169v2-02386	Aster-01572	
C169v2-06864	Aster-09453	
C169v2-06865	Aster-03329	
C169v2-06866	Aster-03351	
C169v2-06867	Aster-03350	
C169v2-06712	Aster-08899	
C169v2-06713	Aster-03406	
C169v2-06711	Aster-03407	
C169v2-06868	Aster-02304	
C169v2-06869	Aster-03348	
C169v2-06719	Aster-03309	
C169v2-03568	Aster-07826	
C169v2-03569	Aster-04380	
C169v2-03563	Aster-02796	
C169v2-03560	Aster-02366	
C169v2-03566	Aster-07198	
C169v2-03564	Aster-07201	
C169v2-03565	Aster-07197	
C169v2-02165	Aster-09554	
C169v2-02161	Aster-01216	
C169v2-02160	Aster-00094	
C169v2-07403	Aster-06710	
C169v2-02162	Aster-04031	
C169v2-07409	Aster-04760	
C169v2-02168	Aster-03917	
C169v1-03321	Aster-00978	
C169v2-01122	Aster-04979	
C169v2-01123	Aster-04985	
C169v2-01124	Aster-02579	
C169v2-01125	Aster-05650	
C169v2-01126	Aster-09028	
C169v2-01128	Aster-06596	
C169v2-01129	Aster-04962	
C169v2-00838	Aster-07983	
C169v2-00834	Aster-02443	
C169v2-00836	Aster-07985	
C169v2-00831	Aster-07974	
C169v1-00675	Aster-06729	
C169v2-06334	Aster-02453	
C169v1-02819	Aster-00861	
C169v2-00376	Aster-01127	
C169v2-08449	Aster-04870	
C169v2-00377	Aster-01131	
C169v2-08444	Aster-07743	
C169v2-08445	Aster-00128	
C169v2-08446	Aster-07794	
C169v2-08442	Aster-07128	
C169v2-08443	Aster-00111	
C169v2-00801	Aster-06149	
C169v2-01928	Aster-01224	
C169v2-05245	Aster-01477	
C169v2-05247	Aster-08826	
C169v2-05246	Aster-01478	
C169v2-05241	Aster-01481	
C169v2-05711	Aster-06350	
C169v2-05248	Aster-08816	
C169v2-08038	Aster-02825	
C169v2-03715	Aster-02805	
C169v2-03714	Aster-00664	
C169v2-03717	Aster-09368	
C169v2-03716	Aster-02867	
C169v2-03711	Aster-02869	
C169v2-03710	Aster-02870	
C169v2-03713	Aster-02866	
C169v2-03712	Aster-02868	
C169v2-00624	Aster-06810	
C169v2-07266	Aster-05955	
C169v2-00625	Aster-06811	
C169v2-07261	Aster-07429	
C169v2-00155	Aster-02928	
C169v2-07262	Aster-00048	
C169v2-08866	Aster-01020	
C169v2-00622	Aster-06807	
C169v2-08864	Aster-01052	
C169v2-08865	Aster-01060	
C169v2-08862	Aster-04861	
C169v2-08863	Aster-01061	
C169v2-08860	Aster-09222	
C169v2-08737	Aster-04798	
C169v2-01037	Aster-01473	
C169v2-07658	Aster-01794	
C169v2-07659	Aster-01013	
C169v2-01035	Aster-06554	
C169v2-07517	Aster-06915	
C169v2-02036	Aster-08962	
C169v2-04134	Aster-04592	
C169v2-03979	Aster-04411	
C169v2-02742	Aster-00632	
C169v2-09542	Aster-02135	
C169v2-05507	Aster-07361	
C169v2-02745	Aster-08965	
C169v2-03972	Aster-05352	
C169v2-03974	Aster-04191	
C169v2-02032	Aster-00983	
C169v2-05407	Aster-07325	
C169v2-05505	Aster-07351	
C169v2-02747	Aster-04185	
C169v2-05950	Aster-05665	
C169v2-05501	Aster-07352	
C169v2-05954	Aster-00122	
C169v2-05400	Aster-09155	
C169v2-02598	Aster-04134	
C169v2-02595	Aster-06623	
C169v2-02596	Aster-02914	
C169v2-01719	Aster-06733	
C169v2-01718	Aster-08152	
C169v2-01711	Aster-06037	
C169v2-01715	Aster-08205	
C169v2-01714	Aster-02560	
C169v2-00444	Aster-05312	
C169v2-00445	Aster-05313	
C169v2-00446	Aster-06835	
C169v2-00447	Aster-06836	
C169v2-00442	Aster-04989	
C169v2-00992	Aster-07501	
C169v2-00990	Aster-05971	
C169v2-00448	Aster-02602	
C169v2-00449	Aster-06833	
C169v2-00994	Aster-07502	
C169v2-00995	Aster-07503	
C169v2-02628	Aster-00557	
C169v2-02629	Aster-04122	
C169v2-08632	Aster-06661	
C169v2-08630	Aster-06690	
C169v2-02622	Aster-00784	
C169v2-02623	Aster-04160	
C169v2-02620	Aster-09071	
C169v2-02626	Aster-04109	
C169v2-02627	Aster-00722	
C169v2-02625	Aster-04158	
C169v2-01825	Aster-06608	
C169v2-01824	Aster-05969	
C169v2-01827	Aster-01126	
C169v2-01826	Aster-02957	
C169v2-01821	Aster-00236	
C169v2-01820	Aster-05142	
C169v2-01823	Aster-08305	
C169v2-01829	Aster-01187	
C169v2-01828	Aster-09466	
C169v2-06299	Aster-03604	
C169v2-06298	Aster-03592	
C169v2-00661	Aster-06849	
C169v2-00190	Aster-03053	
C169v2-00191	Aster-09284	
C169v2-00665	Aster-06841	
C169v2-00194	Aster-03056	
C169v2-00195	Aster-03055	
C169v2-00199	Aster-03049	
C169v2-05018	Aster-04700	
C169v2-05019	Aster-04699	
C169v2-05011	Aster-04706	
C169v2-05013	Aster-02228	
C169v2-05014	Aster-04712	
C169v2-05015	Aster-04704	
C169v1-03688	Aster-02390	
C169v2-09358	Aster-08385	
C169v2-09351	Aster-03711	
C169v2-04639	Aster-01959	
C169v2-04633	Aster-05641	
C169v2-04632	Aster-02013	
C169v2-04631	Aster-02051	
C169v2-04630	Aster-02012	
C169v2-04636	Aster-01962	
C169v2-04635	Aster-01993	
C169v2-04634	Aster-01994	
C169v2-05908	Aster-05231	
C169v2-05909	Aster-05228	
C169v2-05901	Aster-02566	
C169v2-05907	Aster-05229	
C169v2-05904	Aster-05783	
C169v2-05905	Aster-07703	
C169v2-06909	Aster-09149	
C169v2-06908	Aster-00619	
C169v2-06907	Aster-01249	
C169v2-06905	Aster-01251	
C169v2-06904	Aster-03368	
C169v2-06903	Aster-07890	
C169v2-06901	Aster-03371	
C169v2-03364	Aster-01400	
C169v2-03366	Aster-02494	
C169v2-03367	Aster-02308	
C169v2-03360	Aster-01204	
C169v2-03361	Aster-01207	
C169v2-08192	Aster-06993	
C169v2-08193	Aster-05490	
C169v2-08190	Aster-09000	
C169v2-08191	Aster-08999	
C169v2-03368	Aster-02314	
C169v2-08194	Aster-06597	
C169v2-08195	Aster-05493	
C169v2-02365	Aster-04053	
C169v2-02363	Aster-04072	
C169v2-02361	Aster-04152	
C169v2-02360	Aster-04440	
C169v2-02369	Aster-04103	
C169v2-06843	Aster-03439	
C169v2-06841	Aster-02077	
C169v2-06846	Aster-09499	
C169v2-06844	Aster-03435	
C169v2-06845	Aster-09468	
C169v2-06848	Aster-08132	
C169v2-06849	Aster-09502	
C169v2-03500	Aster-02524	
C169v2-03503	Aster-08963	
C169v2-03504	Aster-02326	
C169v2-03505	Aster-02321	
C169v2-03506	Aster-07385	
C169v2-03507	Aster-02325	
C169v2-03508	Aster-07118	
C169v2-08998	Aster-01577	
C169v2-08999	Aster-01637	
C169v2-02102	Aster-06427	
C169v2-02101	Aster-07076	
C169v2-07460	Aster-04653	
C169v2-07467	Aster-00497	
C169v2-07469	Aster-01365	
C169v2-07468	Aster-04751	
C169v2-06599	Aster-08484	
C169v2-05652	Aster-06414	
C169v2-06593	Aster-09292	
C169v2-06596	Aster-01062	
C169v2-08170	Aster-05496	
C169v2-09487	Aster-09690	
C169v2-09485	Aster-06744	
C169v2-06338	Aster-00258	
C169v2-01108	Aster-04976	
C169v2-06335	Aster-03033	
C169v2-06337	Aster-00163	
C169v2-06330	Aster-07782	
C169v2-06331	Aster-00203	
C169v2-06332	Aster-07405	
C169v2-01101	Aster-07102	
C169v2-02316	Aster-04076	
C169v2-00859	Aster-02150	
C169v2-02317	Aster-04086	
C169v2-00857	Aster-02236	
C169v2-02314	Aster-04074	
C169v2-00855	Aster-07986	
C169v2-02312	Aster-01732	
C169v2-02313	Aster-04869	
C169v2-07880	Aster-04223	
C169v2-07883	Aster-06468	
C169v2-02310	Aster-04058	
C169v2-07887	Aster-09043	
C169v2-07886	Aster-06442	
C169v2-07889	Aster-09041	
C169v2-07888	Aster-07822

Je voudrais recuperer a chaque fois les couples qui se suivent , exemple
C169v2-03066 Aster-05821
C169v2-03065 Aster-05822

voici mon code:

Code :

Sélectionner tout - Visualiser dans une fenêtre à part

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#!/usr/local/bin/perl
 
 
my %hash = ();
my %hash2 = ();
 
 
 
open my $fh, '<', 'RBH.txt' or die;
 
# liste des positions du gène C
my @C_array;
 
# liste des positions du gène Aster
my @Aster_array;
 
while ( my $l = <$fh>){
 
 
	if ($l =~ m/C169v2-(\d+)\tAster-(\d+)/){
		push (@C_array, $1);
		push (@Aster_array, $2);
 
 
 
	}
}
 
 
 
 
for (my $i =0; $i<$#C_array; $i++){
 
	# on prend les gènes C deux par deux (j'ai gardé ta nomination A et B))
 
	my $A = $C_array[$i];
 
	my $B = $C_array[$i+1];
 
	my $C = $Aster_array[$i];
 
	my $D = $Aster_array[$i+1];
 
while ( my $l = <$fh>){
	chomp;
	 my ($cv,$ast)=split(/\t/,$l);	
	# on vérifie que la différence
	# soit au plus de 1
 }
	if ((abs ($A - $B) == 1) &&(abs($C-$D)==1)){
 		if ($A>$B){
			print "C169v2-".$B."\t"."Aster-".$D."\t". "C169v2-".$A."\t"."Aster-".$C."\n";
 
 
		}
		else{
			print "C169v2-".$A."\t"."Aster-".$C."\t". "C169v2-".$B."\t"."Aster-".$D."\n";
 
		}
    }
 
}

En le testant ca a l'air de marcher mais le souci, cest que j'ai un ami qui trouve plus de couple que moi.
Je vous ai mis une partie du fichier d'entree car il est super lourd, et je ne pouvais pas tout envoyer

Merci

[shadow19c]

Bonjour,
La dernière manière (ancienne version), on se base directement de la mise en page du fichier.
Car je m'aperçois, qu'il oubli des couples car il sont éloignes dans le fichier.
exemple:
si j'ai CV-125 Aster-002
CV-124 Aster-001
CV-148 Aster-312
CV-123 Aster-000

Il oubli le CV-123 Aster-000
CV-124 Aster-001





merci