1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
|
m = 0
//Select folder containing stacks to process.
input = getDirectory("Choose substack Directory");
//Create output folder.
File.makeDirectory(input+ File.separator()+"Overlay");
output = input+ File.separator()+"Overlay";
Dialog.create("File type");
Dialog.addString("File suffix: ", ".tif", 5);
Dialog.show();
suffix = Dialog.getString();
setBatchMode(true);
list = getFileList(input);
for (i=0; i<list.length; i++)
{
if (endsWith(list[i], suffix))
{
m++;
open(input+list[i]);
if(indexOf(list[i], "T1")>-1){
setSlice(4);
processFile(output, list[i]);
close();
} else {
if(indexOf(list[i], "T2")>-1)
{
setSlice(4);
processFile2(output, list[i]);
close();
} else {
if(indexOf(list[i], "T3")>-1)
{
setSlice(4);
processFile3(output, list[i]);
close();
}
}
}
}
}
function processFile(output, file)
{
run("Duplicate...", " ");
name = list[i];
dotIndex = indexOf(name, ".");
title = substring(name, 0, dotIndex);
saveAs("tiff", output+File.separator()+" T1");
close();
}
function processFile2(output, file)
{
run("Duplicate...", " ");
name = list[i];
dotIndex = indexOf(name, ".");
title = substring(name, 0, dotIndex);
saveAs("tiff", output+File.separator()+" T2");
close();
}
function processFile3(output, file)
{
run("Duplicate...", " ");
name = list[i];
dotIndex = indexOf(name, ".");
title = substring(name, 0, dotIndex);
saveAs("tiff", output+File.separator()+" T3");
close();
}
list = getFileList(input);
for (i=0; i<list.length; i++)
{
if (endsWith(list[i], suffix))
{
m++;
open(input+list[i]);
if(indexOf(list[i], "T7")>-1){
Stack.setFrame(1);
processFile7(output, list[i]);
close();
} else {
if(indexOf(list[i], "T8")>-1)
{
Stack.setFrame(1);
processFile8(output, list[i]);
close();
}
}
}
}
}
function processFile7(output, file)
{
run("Duplicate...", " ");
name = list[i];
dotIndex = indexOf(name, ".");
title = substring(name, 0, dotIndex);
saveAs("tiff", output+File.separator()+" T7");
close();
}
function processFile8(output, file)
{
run("Duplicate...", " ");
name = list[i];
dotIndex = indexOf(name, ".");
title = substring(name, 0, dotIndex);
saveAs("tiff", output+File.separator()+" T8");
close();
}
setBatchMode(false);
showMessage("Macro is finished"); |
