problème avec le module Bio::Tools::Run::Alignment::Clustalw

module ClustalW


Fonctionne sans aucun problème

Code:

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1 2 3 4

# Pass the factory a list of sequences to be aligned. $seq_array_ref = \@seq_array; # where @seq_array is an array of Bio::Seq objects $aln = $factory->align($seq_array_ref);

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Mais avec la fonction run pourtant décrite dans ce module

Code:

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1 2	# Get both an alignment and a tree ($aln, $tree) = $factory->run(\@seq_array);

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J'obtiens l'erreur :

Citation:

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------------- EXCEPTION Bio::Root::NotImplemented -------------
MSG: Abstract method "Bio::Tools::Run::WrapperBase::run" is not implemented by package Bio::Tools::Run::Alignment::Clustalw.
This is not your fault - author of Bio::Tools::Run::Alignment::Clustalw should be blamed!

STACK Bio::Root::RootI::throw_not_implemented C:/Perl/site/lib/Bio/Root/RootI.pm:522
STACK Bio::Tools::Run::WrapperBase::run C:/Perl/site/lib/Bio/Tools/Run/WrapperBase.pm:95
STACK main::ClustalW2 ClustalW_Tree.pl:82
STACK toplevel ClustalW_Tree.pl:36

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Dois-je simplement installer WrapperBase.pm


Merci,