problème avec le module Bio::Tools::Run::Alignment::Clustalw
module ClustalW
Fonctionne sans aucun problème
Code:
1 2 3 4
| # Pass the factory a list of sequences to be aligned.
$seq_array_ref = \@seq_array;
# where @seq_array is an array of Bio::Seq objects
$aln = $factory->align($seq_array_ref); |
Mais avec la fonction run pourtant décrite dans ce module
Code:
1 2
| # Get both an alignment and a tree
($aln, $tree) = $factory->run(\@seq_array); |
J'obtiens l'erreur :
Citation:
------------- EXCEPTION Bio::Root::NotImplemented -------------
MSG: Abstract method "Bio::Tools::Run::WrapperBase::run" is not implemented by package Bio::Tools::Run::Alignment::Clustalw.
This is not your fault - author of Bio::Tools::Run::Alignment::Clustalw should be blamed!
STACK Bio::Root::RootI::throw_not_implemented C:/Perl/site/lib/Bio/Root/RootI.pm:522
STACK Bio::Tools::Run::WrapperBase::run C:/Perl/site/lib/Bio/Tools/Run/WrapperBase.pm:95
STACK main::ClustalW2 ClustalW_Tree.pl:82
STACK toplevel ClustalW_Tree.pl:36
---------------------------------------------------------------
Dois-je simplement installer WrapperBase.pm
Merci,