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| #!/usr/local/bin/perl
use Tk;
use strict;
use warnings;
use Carp qw(confess);
use Getopt::Long;
my ($file_file,$cx_file);
my (%hash,%dico);
# ne pas changer $value_fixe
my $value_fixe = 970; # taille du rectangle
GetOptions("cx=s" => \$cx_file,"file=s" => \$file_file);
open(my $file,'<',$file_file) or die "$file_file : $!\n\n";
open(my $cx,'<',$cx_file) or die "$cx_file : $!\n\n";
while(<$cx>){
# start des crosslink de chaque FBtr
chomp;
my($chr,$start_cx,$stop_cx,$id_cx,$nb_cx,$sens_cx) = split /\t/,$_;
$chr =~ s/chr//g;
my ($read,$FBtr,$name,$length_trans)= split /;/,$id_cx;
push(@{$hash{$chr}->{'cx'}}, $start_cx);
$hash{$chr}->{'length'}=$length_trans; # longueur du transcript
}
while(<$file>){
# coordonnées de l'insert sur chaque transcript
chomp;
my($chr,$start_insert,$stop_insert,$id_insert,$other,$nb_insert,$sens_insert) = split /\s+/,$_;
print "$start_insert\t$stop_insert\n";
$chr =~ s/chr//g;
push(@{$hash{$chr}->{'insert'}}, $id_insert);
$dico{$id_insert}->{'start'} = $start_insert ; #
$dico{$id_insert}->{'stop'} = $stop_insert ;
my $length_insert = $stop_insert-$start_insert;
$dico{$id_insert}->{'length'} = $length_insert; # taille de l'insert
}
foreach my $transcript (keys(%hash)){
# Main Window
my $mw = new MainWindow;
$mw->resizable( 0, 0 );
my $cns = $mw -> Canvas(-relief=>"sunken", -background=>"white", -width => "1000" , -height => "500");
# rectangle representant le transcript
$cns -> createRectangle(20,400,990,410,-fill => "thistle");
my $length = $hash{$transcript}->{'length'};
#my $count_x = 0;
#my $count_y = 0;
# positionner les cx sur les transcripts :
foreach my $crosslink (@{$hash{$transcript}->{'cx'}}){
my $x1 = (($crosslink*$value_fixe)/$length)+20;
my $y1 = 400;
my $x2 = $x1+5;
my $y2 =410 ;
$cns -> createRectangle($x1,$y1,$x2,$y2,-fill => "red");
}
my $postscript = $cns->postscript(-file=>"$transcript.ps" );
exit 0;
} |
