Parser un fichier swissProt
Bonjour,
Je suis débutante en perl et je veux recupérer des informations dans le fichier swissProt:
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Citation:
ID PYRB_LACLL
AC 3RQV1731;
DE RecName: Full=(trusted)Aspartate carbamoyltransferase;
DE EC=2.1.3.2;
DE AltName: Full=Aspartate transcarbamylase;
DE Short=ATCase;
GN Name=pyrB;
OS Lactococcus lactis subsp. lactis.
OC Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus.
OX NCBI_TaxID=1360;
CC -!- CATALYTIC ACTIVITY: Carbamoyl phosphate + L-aspartate = phosphate
CC + N-carbamoyl-L-aspartate.
CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo
CC pathway; (S)-dihydroorotate from bicarbonate: step 2/3.
CC -!- SIMILARITY: Belongs to the ATCase/OTCase family.
DR GO; GO:0004070; F:aspartate carbamoyltransferase activity; IEA:HAMAP.
DR GO; GO:0006221; P:pyrimidine nucleotide biosynthetic process; IEA:HAMAP.
DR HAMAP; MF_00001; Asp_carb_tr; 1; -.
DR PROSITE; PS00097; CARBAMOYLTRANSFERASE; 1.
KW Pyrimidine biosynthesis; Transferase.
**
** ################# INTERNAL SECTION ##################
**HA SAM; Annotated by SAM 1.216; MF_00001.29; 14-FEB-2012.
**HA FAM; Method MF_00001; PYRB; Trusted match; 37.146 (+3.9).
**HA FAM; Method MF_01109; OTC; Weak match; 18.126 (-50.3).
**HR DE 1742307__1743239 (reverse), 311 amino acids.
SQ SEQUENCE 310 AA; 34633 MW; 53DDA4B1C6F32776 CRC64;
MSVKNGLVQL ENLTSMEKLS VDEVMGLIKR ASAFKAGTAE FDLEKQTFAS NLFFENSTRT
HHSFHIAERK LGLDVLEFDA QASSISKGET LYDTVLTLDA LGVDICVIRS GVEHYYEELV
NSDNIHCAIV NGGDGSGQHP SQCLLDLMTI YEEFGKFEGL KIAISGDLTH SRVAKSNMMM
LQKLGARLYF TGPAAWYSEE FDDYGHYANL DRILPELDVH MLLRVQHERH DSGESFSKEG
YHNHFGLTEE RAKMLKPTAI IMHPAPVNRD VEIADSLVEN SQSRIVQQMS NGVYTRMAIL
EAILAGKKAK
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J'ai trouver le package swissknif qui permt de le faire.
J'ai pu récupérer des champs comme; AC, ID, CC. MAIS, j'ai pas pu recuperer les champs DR,FT et **HA, **HR
Quelq'un peut m'aider s'il vous plait
