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| void read_params(char* filename,FILE * pFile, SimulationStruct *simu, int ignoreAdetection) {
char str[STR_LEN];
float dtot = 0.0f;
float temp = 0.0f;
int i = 0;
int j = 0;
int k = 0;
unsigned int start_weight;
while (!feof(pFile)) {
fscanf(pFile, "%s", str);
//printf("test = %s\n", str);
if (strcmp(str, "PhotonNumber") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
fscanf(pFile, "%lu", &(simu->number_of_photons));
//printf("photon : %lu\n", simu->number_of_photons);
}
else if (strcmp(str, "LayerNumber") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
fscanf(pFile, "%d", &(simu->n_layers));
printf("n_layers : %d\n", simu->n_layers);
// Allocate memory for the layers (including one for the upper and one for the lower)
simu->layers = (LayerStruct*)malloc(sizeof(LayerStruct)*(simu->n_layers + 2));
if (simu->layers == NULL) { perror("Failed to malloc layers.\n"); }//{printf("Failed to malloc simulations.\n");return 0;}
}
else if(strcmp(str, "LambdaNumber")==0){
fscanf(pFile, "%s",str); //juste pour lire les ":"
fscanf(pFile, "%d", &(simu->lambda_nb));
printf("LBD TOT = %d\n",(simu->lambda_nb));
}
else if (strcmp(str, "dr") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
//simu->det = (DetStruct*)malloc(sizeof(DetStruct)); //allocation DetStruct
//if (simu->det == NULL) { perror("Failed to malloc det.\n"); }
fscanf(pFile, "%f", &(simu->det.dr));
//printf("dr = %f\n", simu->det.dr);
}
else if (strcmp(str, "dz") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
fscanf(pFile, "%f", &(simu->det.dz));
//printf("dz = %f\n", simu->det.dz);
}
else if (strcmp(str, "nr") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
fscanf(pFile, "%d", &(simu->det.nr));
}
else if (strcmp(str, "nz") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
fscanf(pFile, "%d", &(simu->det.nz));
//par défaut
simu->det.na = 1;
}
//layer
else if (strcmp(str, "N") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
i = 0;
while (i < simu->n_layers + 2) {
//printf("i = %d\n", i);
fscanf(pFile, "%f ", &(simu->layers[i].n));
//printf("n = %f\n", simu->layers[i].n);
i = i + 1;
}
}
else if (strcmp(str, "nFluo") == 0) {
fscanf(pFile, "%s", str);
for (i = 1; i < simu->n_layers + 1; i++)
fscanf(pFile, "%d", &(simu->layers[i].nb_fluo));
printf("nfluo = %d\n", simu->layers[i-1].nb_fluo);
}
else if (strcmp(str, "muA") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
for (i = 1; i < simu->n_layers + 1; i++) {
for(j = 0; j< simu->lambda_nb*simu->n_layers; j++){
fscanf(pFile, "%f", &(simu->layers[i].mua[j]))
}
}
}
else if (strcmp(str, "muS") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
for (i = 1; i < simu->n_layers+1; i++) {
for(j = 0; j< simu->lambda_nb*simu->n_layers; j++){
fscanf(pFile, "%f", &(simu->layers[i].mus[j]));
}
}
}
else if (strcmp(str, "g") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
for (i = 1; i < simu->n_layers+1; i++)
fscanf(pFile, "%f", &(simu->layers[i].g));
}
else if (strcmp(str, "d") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
for (i = 1; i < simu->n_layers+1; i++) {
simu->layers[i].z_min = dtot;
//printf("zmin = %f\n", simu->layers[i].z_min);
fscanf(pFile, "%f", &temp);
dtot = dtot + temp;
simu->layers[i].z_max = dtot;
//printf("zmax = %f\n", simu->layers[i].z_max);
}
}
else if (strcmp(str, "muaf") == 0) {
printf("test muaf\n");
fscanf(pFile, "%s", str); // juste pour lire les ":"
float tot[NUM_LBD_EMI]={0};
for (i = 1; i < simu->n_layers+1; i++)
{
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
for (k = 0; k < simu->lambda_nb; k++){
fscanf(pFile, "%f", &(simu->layers[i].muaf[j][k]));
tot[k] = tot[k] + simu->layers[i].muaf[j][k];
printf("muaf[%d][%d] = %f\n",j,k,simu->layers[i].muaf[j][k]);
printf("tot[%d] = %f\n",k,tot[k]);
}
}
for (k = 0; k < simu->lambda_nb; k++) {
if (simu->layers[i].mus[k] < 0.000001){
simu->layers[i].mutr[k] = FLT_MAX;
tot[k] = 0.0f;
}
else {
simu->layers[i].mutr[k] = 1 / (simu->layers[i].mus[k] + simu->layers[i].mua[k] + tot[k]);
tot[k] = 0.0f; //remise a zero
}
}
//printf("mustr = %f\n", simu->layers[i].mutr);
}
}
else if (strcmp(str, "rq") == 0) {
fscanf(pFile, "%s", str); // juste pour lire les ":"
float p_tot[NUM_LBD_EMI]; //proba emission d'un fluorophore muaf * rq
printf("i=%d\n", i);
for (i = 1; i < simu->n_layers + 1; i++) {
printf("n_fluo=%d\n", simu->layers[i].nb_fluo);
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
for (k = 0; k < simu->lambda_nb; k++){
fscanf(pFile, "%f", &(simu->layers[i].rq[j]));
p_tot[k] = p_tot[k] + (simu->layers[i].rq[j]*simu->layers[i].muaf[j][k]);
printf("rq = %f\n", simu->layers[i].rq[j]);
printf("p_tot[%d]=%f\n",k,p_tot[k]);
// printf("i=%d\n", i);
}
}
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
for(k = 0; k < simu->lambda_nb; k++){
if (p_tot[k]==0){
simu->layers[i].proba_fluo[j][k] =1;
}
else{
simu->layers[i].proba_fluo[j][k] = (simu->layers[i].rq[j]*simu->layers[i].muaf[j][k]) / p_tot[k];
printf("proba fluo = %f\n", simu->layers[i].proba_fluo[j][k]);
p_tot[k] = 0.0f;
}
}
}
}
}
else if (strcmp(str, "nLbd") == 0) {
printf("TEST\n");
fscanf(pFile, "%s", str); // juste pour lire les ":"
//printf("i=%d", i);
for (i = 1; i < simu->n_layers + 1; i++) {
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
fscanf(pFile, "%d", &(simu->layers[i].nb_lbd[j]));
// printf("i=%d", i);
//printf("j=%d", j);
printf("nLbd = %d\n", simu->layers[i].nb_lbd[j]);
}
}
//printf("i = %d\n", i);
//printf("nLbd = %d\n", simu->layers[1].nb_lbd[0]);
}
else if (strcmp(str, "Emi") == 0) {
printf("Emi\n");
fscanf(pFile, "%s", str); // juste pour lire les ":"
//simu->layers[1].nb_lbd[0]=5;
for (i = 1; i < simu->n_layers + 1; i++) {
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
printf("NB_LBD_EMI=%d\n", simu->layers[i].nb_lbd[j]);
for (k = 0; k < simu->layers[i].nb_lbd[j]; k++) {
fscanf(pFile, "%f ", &(simu->layers[i].emi[j][k]));
// printf("emi = %f\n", simu->layers[i].emi[j][k]);
// printf("i=%d\n", i);
/* printf("j = %d\n", j);
printf("k = %d\n", k);*/
}
}
}
float acc = 0.0f;
float sumEmi = 0.0f;
float probaEmi[NUM_LBD_EMI];//(N, 0.0);
for (i = 1; i < simu->n_layers + 1; i++) {
for (j = 0; j < simu->layers[i].nb_fluo; j++) {
for (k = 0; k < simu->layers[i].nb_lbd[j]; k++) {
sumEmi = sumEmi + simu->layers[i].emi[j][k];
// printf("sumEmi = %f\n", sumEmi);
}
for (k = 0; k < simu->layers[i].nb_lbd[j]; k++) {
probaEmi[k] = simu->layers[i].emi[j][k] / sumEmi;
acc = acc + probaEmi[k];
simu->layers[i].cumSumEmi[j][k] = acc;
//printf("probaEmi = %f\n", probaEmi[k]);
// printf("i=%d\n", i);
// printf("j = %d\n", j);
// printf("k = %d\n", k);
// printf("cumsum = %f\n", simu->layers[i].cumSumEmi[j][k]);
}
sumEmi = 0.0f;
acc = 0.0f;
}
}
}
else if (strcmp(str, "pasLbd") == 0) {
printf("PAS\n");
fscanf(pFile, "%s", str);
fscanf(pFile, "%d ", &(simu->pasLbd));
}
} |
