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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="description" content="Flanking SNP Sequence">
<link rel="icon" href="favicon.ico">
<title>Flanking SNP Sequence</title>
<link href="css/bootstrap.min.css" rel="stylesheet">
<link href="css/bootstrap-table.css" rel="stylesheet">
<link href="css/jquery-ui.css" rel="stylesheet">
<style>
.odd_row { background: #e9effa; }
.even_row { }
</style>
</head>
<body> <nav class="navbar navbar-default">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#myNavbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
</div>
<div class="collapse navbar-collapse" id="myNavbar">
<ul class="nav navbar-nav">
<li class="active"><a href="/index.html">Home</a></li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Tools <span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="/ontology.html">Gene Ontology Search</a></li>
<li><a href="/keyword.html">Keyword Search</a></li>
<li><a href="/interpro.html">InterPro Search</a></li>
<li><a href="/location.html">Location</a></li>
<li><a href="/locus.html">Locus Search</a></li>
<li><a href="/flankSNPseq.html">Flanking SNP Sequence</a></li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Blast <span class="caret"></span></a>
<ul class="dropdown-menu" role="menu">
<li><a href="/primer_designer.html">Primer Designer</a></li>
<li><a href="/primer_blaster.html">Primer Blaster</a></li>
<li><a href="/blast.html">Blast</a></li>
</ul>
</li>
<li><a href="/cgi-bin/gbrowse/elaeis_guineensis">Gbrowse</a></li>
</div>
</div>
</nav><!-- Begin page content -->
<div class="container">
<p align="justify">This tool was designed to obtain the SNP flanking sequence. <br />
<div class="loading"></div>
<div class="run"></div>
<!-- <div class="tab-content"> -->
<div id="form">
<form class="form-horizontal" role="data" id="data" method="post" enctype="multipart/form-data" >
<div class="form-group">
<label class="control-label col-sm-2" for="input">Paste SNP <br /><a onclick="jQuery('#load_ex').val(example); return false;">Load Example</a></label>
<div class="col-sm-10">
<!--Textarea-->
<input type="radio" name="filetype" checked="checked" value="text" id="text1" />
<textarea class="form-control" rows="5" name="query" style="font-family:Courier New;" id="load_ex"></textarea>
</div>
<!-- -->
<!-- Test Upload de fichier vcf -->
<div class="col-sm-10">
<input type="radio" name="filetype" value="file" id="file1" /><label for="file1"> Or upload your VCF</label>
<input name="query" type="file" lang="en" size="30" />
</div>
<!-- -->
</div>
<div class="form-group">
<label class="control-label col-sm-2" >Flanking Sequence Size</label>
<label class="control-label col-sm-1">Downstream</label>
<div class="col-xs-2"><input class="form-control" id="ex1" type="text" name="size_min" placeholder="60" /></div>
<label class="control-label col-sm-1">Upstream</label>
<div class="col-xs-2"><input class="form-control" id="ex1" type="text" name="size_max" placeholder="60" /></div>
</div>
<div class="form-group">
<div class="col-sm-offset-2 col-sm-10">
<input type="hidden" name="type" value="snp">
<button type="submit" id="submit" class="submit btn btn-primary">Run</button>
</div>
</div>
</form>
<!--</div>
</div>
</div> -->
</div>
<div class="show_result">
<div class="container">
<div class="output" id="output"></div>
<table id="result" class="table table-no-bordered"
data-toolbar="#toolbar"
data-search="true"
data-show-toggle="true"
data-show-columns="true"
data-show-export="true"
data-page-size="10"
data-pagination="true"
data-pagination-first-text="First"
data-pagination-pre-text="Previous"
data-pagination-next-text="Next"
data-pagination-last-text="Last"
data-page-list="[10, 20, 50, 100, 200]"
data-side-pagination="client">
</table>
</div>
</div>
<!--<script type="text/javascript" src="/js/jquery-1.5.1.min.js"></script>
<script type="text/javascript" src="/js/jquery-ui-1.8.11.custom.min.js"></script>
<script type="text/javascript" src="/js/jquery.doubleSelect.js"></script>
<script type="text/javascript" src="/js/database.js"></script>
<script type="text/javascript" src="/js/form.js"></script>-->
<script src="js/jquery.min.js"></script>
<script src="js/bootstrap.min.js"></script>
<script src="js/jquery.doubleSelect.js"></script>
<script src="js/database.js"></script>
<script src="js/bootstrap-table.js"></script>
<script src="js/bootstrap-table-export.js"></script>
<script src="js/jquery.validate.min.js"></script>
<script src="js/tableExport.js"></script>
<script type="text/javascript">
$(document).ready(function() {
$('.submit').click(function (event) {
$('#form').fadeOut('slow');
$('.loading').show();
$('.run').html("<div><img src='images/loading.gif' /> Please Wait</div> ");
$.ajax({
url: "/cgi-bin/flankingsnp.pl",
enctype: 'multipart/form-data',
type: "POST",
data:$('#data').serialize(),
dataType: 'json',
success: function(data) {
$('.loading').fadeOut('slow');
$('.run').fadeOut('slow');
var result = "<ul>";
result += "<li>"+data.search+"</li>";
result += "<li>Number of result : "+data.num_result+"</li>";
if (data.file_nucl) {
result += "<li><a href='"+data.file_nucl+"' target='_blank'>Download Flank Sequence</a></li>";
}
result += "</ul>";
$("#output").html(result);
$('#result').bootstrapTable({
columns: [ {
field: 'id',
sortable: true,
title: 'Query Name'
}, {
field: 'seq_id',
sortable: true,
title: 'Flank Sequence'
}],
data: data.result
});
},
error: function() {
alert("Failed to load form");
}
});
return false;
});
});
</script>
<script type="text/javascript">
<!--//--><![CDATA[//><!--
var example = 'EG01_01\t36486\t.\tC\tT\tPASS\nEG01_01\t364806\t.\tC\tT\tPASS\n';
//--><!]]>
</script>
</body>
</html> |
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