#!/usr/bin/env python from ctypes import * from ctypes.util import find_library import sys # For unix the prefix 'lib' is not considered. if find_library('svm'): libsvm = CDLL(find_library('svm')) elif find_library('libsvm'): libsvm = CDLL(find_library('libsvm')) else : if sys.platform == 'win32': libsvm = CDLL('../windows/libsvm.dll') else : libsvm = CDLL('../libsvm.so.1') # Construct constants SVM_TYPE = ['C_SVC', 'NU_SVC', 'ONE_CLASS', 'EPSILON_SVR', 'NU_SVR' ] KERNEL_TYPE = ['LINEAR', 'POLY', 'RBF', 'SIGMOID', 'PRECOMPUTED'] for i, s in enumerate(SVM_TYPE): exec("%s = %d" % (s , i)) for i, s in enumerate(KERNEL_TYPE): exec("%s = %d" % (s , i)) PRINT_STRING_FUN = CFUNCTYPE(None, c_char_p) def print_null(s): return def genFields(names, types): return list(zip(names, types)) def fillprototype(f, restype, argtypes): f.restype = restype f.argtypes = argtypes class svm_node(Structure): _names = ["index", "value"] _types = [c_int, c_double] _fields_ = genFields(_names, _types) def gen_svm_nodearray(xi, feature_max=None, issparse=None): if isinstance(xi, dict): index_range = xi.keys() elif isinstance(xi, (list, tuple)): index_range = range(len(xi)) else : raise TypeError('xi should be a dictionary, list or tuple') if feature_max : assert(isinstance(feature_max, int)) index_range = filter(lambda j: j <= feature_max, index_range) if issparse : index_range = filter(lambda j:xi[j] != 0, index_range) index_range = sorted(index_range) ret = (svm_node * (len(index_range)+1))() ret[-1].index = -1 for idx, j in enumerate(index_range): ret[idx].index = j ret[idx].value = xi[j] max_idx = 0 if index_range: max_idx = index_range[-1] return ret, max_idx class svm_problem(Structure): _names = ["l", "y", "x"] _types = [c_int, POINTER(c_double), POINTER(POINTER(svm_node))] _fields_ = genFields(_names, _types) def __init__(self, y, x): if len(y) != len(x) : raise ValueError("len(y) != len(x)") self.l = l = len(y) max_idx = 0 x_space = self.x_space = [] for i, xi in enumerate(x): tmp_xi, tmp_idx = gen_svm_nodearray(xi) x_space += [tmp_xi] max_idx = max(max_idx, tmp_idx) self.n = max_idx self.y = (c_double * l)() for i, yi in enumerate(y): self.y[i] = y[i] self.x = (POINTER(svm_node) * l)() for i, xi in enumerate(self.x_space): self.x[i] = xi class svm_parameter(Structure): _names = ["svm_type", "kernel_type", "degree", "gamma", "coef0", "cache_size", "eps", "C", "nr_weight", "weight_label", "weight", "nu", "p", "shrinking", "probability"] _types = [c_int, c_int, c_int, c_double, c_double, c_double, c_double, c_double, c_int, POINTER(c_int), POINTER(c_double), c_double, c_double, c_int, c_int] _fields_ = genFields(_names, _types) def __init__(self, options = None): if options == None: options = '' self.parse_options(options) def show(self): attrs = svm_parameter._names + self.__dict__.keys() values = map(lambda attr: getattr(self, attr), attrs) for attr, val in zip(attrs, values): print(' %s: %s' % (attr, val)) def set_to_default_values(self): self.svm_type = C_SVC; self.kernel_type = RBF self.degree = 3 self.gamma = 0 self.coef0 = 0 self.nu = 0.5 self.cache_size = 100 self.C = 1 self.eps = 0.001 self.p = 0.1 self.shrinking = 1 self.probability = 0 self.nr_weight = 0 self.weight_label = (c_int*0)() self.weight = (c_double*0)() self.cross_validation = False self.nr_fold = 0 self.print_func = None def parse_options(self, options): argv = options.split() self.set_to_default_values() self.print_func = cast(None, PRINT_STRING_FUN) weight_label = [] weight = [] i = 0 while i < len(argv) : if argv[i] == "-s": i = i + 1 self.svm_type = int(argv[i]) elif argv[i] == "-t": i = i + 1 self.kernel_type = int(argv[i]) elif argv[i] == "-d": i = i + 1 self.degree = int(argv[i]) elif argv[i] == "-g": i = i + 1 self.gamma = float(argv[i]) elif argv[i] == "-r": i = i + 1 self.coef0 = float(argv[i]) elif argv[i] == "-n": i = i + 1 self.nu = float(argv[i]) elif argv[i] == "-m": i = i + 1 self.cache_size = float(argv[i]) elif argv[i] == "-c": i = i + 1 self.C = float(argv[i]) elif argv[i] == "-e": i = i + 1 self.eps = float(argv[i]) elif argv[i] == "-p": i = i + 1 self.p = float(argv[i]) elif argv[i] == "-h": i = i + 1 self.shrinking = int(argv[i]) elif argv[i] == "-b": i = i + 1 self.probability = int(argv[i]) elif argv[i] == "-q": self.print_func = PRINT_STRING_FUN(print_null) elif argv[i] == "-v": i = i + 1 self.cross_validation = 1 self.nr_fold = int(argv[i]) if self.nr_fold < 2 : raise ValueError("n-fold cross validation: n must >= 2") elif argv[i].startswith("-w"): i = i + 1 self.nr_weight += 1 nr_weight = self.nr_weight weight_label += [int(argv[i-1][2:])] weight += [float(argv[i])] else: raise ValueError("Wrong options") i += 1 libsvm.svm_set_print_string_function(self.print_func) self.weight_label = (c_int*self.nr_weight)() self.weight = (c_double*self.nr_weight)() for i in range(self.nr_weight): self.weight[i] = weight[i] self.weight_label[i] = weight_label[i] class svm_model(Structure): def __init__(self): self.__createfrom__ = 'python' def __del__(self): # free memory created by C to avoid memory leak if hasattr(self, '__createfrom__') and self.__createfrom__ == 'C': libsvm.svm_destroy_model(self) def get_svm_type(self): return libsvm.svm_get_svm_type(self) def get_nr_class(self): return libsvm.svm_get_nr_class(self) def get_svr_probability(self): return libsvm.svm_get_svr_probability(self) def get_labels(self): nr_class = self.get_nr_class() labels = (c_int * nr_class)() libsvm.svm_get_labels(self, labels) return labels[:nr_class] def is_probability_model(self): return (libsvm.svm_check_probability_model(self) == 1) def toPyModel(model_ptr): """ toPyModel(model_ptr) -> svm_model Convert a ctypes POINTER(svm_model) to a Python svm_model """ if bool(model_ptr) == False: raise ValueError("Null pointer") m = model_ptr.contents m.__createfrom__ = 'C' return m fillprototype(libsvm.svm_train, POINTER(svm_model), [POINTER(svm_problem), POINTER(svm_parameter)]) fillprototype(libsvm.svm_cross_validation, None, [POINTER(svm_problem), POINTER(svm_parameter), c_int, POINTER(c_double)]) fillprototype(libsvm.svm_save_model, c_int, [c_char_p, POINTER(svm_model)]) fillprototype(libsvm.svm_load_model, POINTER(svm_model), [c_char_p]) fillprototype(libsvm.svm_get_svm_type, c_int, [POINTER(svm_model)]) fillprototype(libsvm.svm_get_nr_class, c_int, [POINTER(svm_model)]) fillprototype(libsvm.svm_get_labels, None, [POINTER(svm_model), POINTER(c_int)]) fillprototype(libsvm.svm_get_svr_probability, c_double, [POINTER(svm_model)]) fillprototype(libsvm.svm_predict_values, c_double, [POINTER(svm_model), POINTER(svm_node), POINTER(c_double)]) fillprototype(libsvm.svm_predict, c_double, [POINTER(svm_model), POINTER(svm_node)]) fillprototype(libsvm.svm_predict_probability, c_double, [POINTER(svm_model), POINTER(svm_node), POINTER(c_double)]) fillprototype(libsvm.svm_destroy_model, None, [POINTER(svm_model)]) fillprototype(libsvm.svm_destroy_param, None, [POINTER(svm_parameter)]) fillprototype(libsvm.svm_check_parameter, c_char_p, [POINTER(svm_problem), POINTER(svm_parameter)]) fillprototype(libsvm.svm_check_probability_model, c_int, [POINTER(svm_model)]) fillprototype(libsvm.svm_set_print_string_function, None, [PRINT_STRING_FUN])