problème installation DCMTK (Dicom)

**angioedema** · 17/04/2013, 10h50

Bonjour,

Léger remise en contexte sur le pourquoi du comment j'en suis arrivée là. Je suis en stage, j'ai des images aux format DICOM issus d'un tomographe et je me dois de déduire les voxels issus de ces coupes, pour une futur reconstruction 3D. Donc idée générale, récupérer les informations issus du DICOM (si possible le texte et extraire l'image), nettoyer un minimum voir retravailler l'image et de là regarder différent algo. pour en déduire les voxels (je n'ai pas trop regarder la question, j'attends de savoir ce que j'ai dans mes fichiers DICOM) ect.

De ce fait pour la première étape et après quelques recherches, il me semblait pas mal de travailler avec DCMTK, puisque j'ai comme contrainte le multiplateforme et l'open source, et tant qu'à faire je préfère le cpp. Mais là, nous arrivons aux drames ....

J'ai voulu utiliser CodeBlock (10 puis dernière version) sous Windows 7, j'ai suivi l'install donné par DCMTK. Avec le CB 10, j'arrivais à générer le projet importable avec CMake 2.8.10.2 (avec des not-found un peu partout), mais quand je le construisais sous CB, il y avait beaucoup trop d'erreur (à priori manque de lib ou autre).
De ce fait j'ai migré sous la dernière version, là idem mais à priori la version du compilateur avait changé. Du coup reprise à zero et je suis repartie sur CMake. Et là gros mystère, j'ai toujours des erreurs ... Je vous mets les générations, si ça peut aider :
- en premier lieu voici la génération (longue) au premier configure du CMake

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The C compiler identification is GNU 4.6.2
The CXX compiler identification is GNU 4.6.2
Check for working C compiler: C:/MinGW/bin/gcc.exe
Check for working C compiler: C:/MinGW/bin/gcc.exe -- works
Detecting C compiler ABI info
Detecting C compiler ABI info - done
Check for working CXX compiler: C:/MinGW/bin/g++.exe
Check for working CXX compiler: C:/MinGW/bin/g++.exe -- works
Detecting CXX compiler ABI info
Detecting CXX compiler ABI info - done
Warning: PNG support will be disabled because libpng directory was not specified. Correct path and re-enable DCMTK_WITH_PNG.
Warning: TIFF support will be disabled because libtiff directory was not specified. Correct path and re-enable DCMTK_WITH_TIFF.
Warning: ZLIB support will be disabled because zlib directory was not specified. Correct path and re-enable DCMTK_WITH_ZLIB.
Found Doxygen: C:/Program Files/doxygen/bin/doxygen.exe (found version "1.8.3.1") 
Info: DCMTK's builtin private dictionary support will be disabled
Info: Thread support will be enabled
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- second point, voici la second configure (+ Generate) de CMake

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Info: DCMTK XML support will be enabled
Info: DCMTK PNG support will be enabled
Info: DCMTK TIFF support will be enabled
Info: DCMTK OPENSSL support will be enabled
Info: DCMTK ZLIB support will be enabled
Info: DCMTK's builtin private dictionary support will be disabled
Info: Thread support will be disabled
Configuring done
Generating done

- et voici après compilation sous CodeBlock le :

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||=== DCMTK, all ===|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:uuid.lib ' unrecognized|
||Warning: .drectve `-defaultlib:uuid.lib ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
||Warning: .drectve `-defaultlib:LIBCMT ' unrecognized|
||Warning: .drectve `-defaultlib:OLDNAMES ' unrecognized|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| undefined reference to `_imp__xmlFree'|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| undefined reference to `_imp__xmlFree'|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| undefined reference to `_imp__xmlFree'|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| undefined reference to `_imp__xmlFree'|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| undefined reference to `_imp__xmlFree'|
CMakeFiles\xml2dcm.dir\objects.a(xml2dcm.obj)xml2dcm.cc|| more undefined references to `_imp__xmlFree' follow|
..\valid.c:(.text[_xmlValidBuildContentModel]+0x6)||undefined reference to `_chkstk'|
..\valid.c:(.text[_xmlValidateElementContent]+0x6)||undefined reference to `_chkstk'|
..\debugXML.c:(.text[_xmlDebugDumpElemDecl]+0x6)||undefined reference to `_chkstk'|
iconv.c:(.text[_libiconvlist]+0x9)||undefined reference to `_chkstk'|
||=== Build finished: 10 errors, 44 warnings (4 minutes, 19 seconds) ==

Je tiens à préciser que j'ai cherché pas mal de temps pour cette erreur, après j'avoue être un peu une noob à ce sujet, sans parler du fait que je ne suis pas à l'aise avec la configuration en générale ...

Du coup sachant que DCMTK est dev sur Linux, j'ai installé Cygwin pour tester (j'ai un linux sur le pc du travail, mais sans les droits ... hyper pratique ==', et je n'ai jamais pris le temps de mettre en dual mon pc personnel ... ). Je suis l'installation de DCMTK et au moment de la stape 2 "make all", il m'indique

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MAKE Version 5.2  Copyright (c) 1987, 2000 Borland
Fatal: 'config-all' does not exist - don't know how to make it

je regarde dans le dossier config et en effet je n'ai rien de tel. Là aussi j'ai cherché un moment mais je n'ai pas la réponse sur le pourquoi ...

Du coup si vous avez des idées, que ce soit sous windows, linux je suis preneuse

Sinon je suis aussi ouverte à toute autre(s) alternative(s) au DCMTK (avec les contraites du début, cpp open source multiplateforme).

Merci à ceux ayant eu le courage de me lire ^^

**angioedema** · 19/04/2013, 09h54

SI ça peut aider quelqu'un voici un tuto pour windows (fichier word dl):

https://www.google.fr/url?sa=t&rct=j...45373924,d.ZG4

Sous linux un bon vieux apt-get marche à la perfection au final, pas besoin de suivre leur INSTALL.

En espérant que ça puisse en aider d'autres

problème installation DCMTK (Dicom)

Bibliothèques C++

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